Niko Sirmpilatze
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All (10)
Community (1)
Conference (1)
Dataset (1)
Software (5)
Standards (2)
Teaching (2)

Projects

A selection of projects I’m currently working on or have contributed to in the past. Each entry links to the project’s website or repository. Many of these are collaborative efforts, but I’ve chosen to highlight those where I played a key role in their launch or development.

Active

movement
Software
Python tools for analysing body movements across space and time.

NeuroBlueprint
Standards
Lightweight data specification for systems neuroscience, inspired by BIDS.

brainglobe-template-builder
Software
Build unbiased anatomical templates from individual 3D brain images.

Video-based analysis of animal behaviour
Teaching
One-day workshop taught annually to neuroscience PhD students.

Running pose estimation on the SWC HPC system
Teaching
Half-day workshop taught annually to neuroscience PhD students.

afids-macaca
Software
Standards
Anatomical fiducials protocol adapted for macaques.
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Past

Title Categories Description
  pcarpet Software Create a carpet plot from fMRI data and decompose it with PCA
  RheMAP Software, Dataset Non-linear warps between common rhesus macaque brain templates
  PRIME-RE Community An open resource exchange platform for non-human primate neuroimaging
  Neurizons Conference A biennial conference organized by the students of the IMPRS for Neurosciences in Göttingen
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